About the ChIPBase Site

Welcome to ChIPBase

   ChIPBase, an integrated resource and platform for decoding transcription factor binding maps, expression profiles and transcriptional regulation of long non-coding RNAs (lncRNAs, lincRNAs), microRNAs, other ncRNAs(snoRNAs, tRNAs, snRNAs, etc.) and protein-coding genes from ChIP-Seq data. ChIPBase currently includes millions of transcription factor binding sites (TFBSs) among 6 species. ChIPBase provides several web-based tools and browsers to explore TF-lncRNA, TF-miRNA, TF-mRNA, TF-ncRNA and TF-miRNA-mRNA regulatory networks.(Release 1.1: 1 November 2012,    Tutorial)

How to cite:

    If you make use of the data and web-server presented here, please cite the following article in addition to the primary data sources:
   Yang JH, Li JH, Jiang S, Zhou H and Qu LH.
   ChIPBase: A database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data.
   Nucleic Acids Res. 2013 Jan;41:D177-87.Epub 2012 Nov 17
   [Full Text]   [Full Text (PDF)]   [Supplementary Data]
   ChIPBase Services   ChIPBase Browsers and Tools   How to Use ChIPBase...
Browse ChIP-Seq ExperimentsdeepView BrowserHow to use the deepView Browser
Browse Transcription factor binding sitesExpression profiles of lncRNAsHow to use the Expression pattern
Browse Transcriptional regulation of lncRNAsAnnotate ChIP-Seq regionsHow to use the Annotation Tool
Browse Transcriptional regulation of microRNAsAnnotate regulatory elements of lncRNAs/miRNAsHow to use the GenomeView Tool
Browse Transcriptional regulation of other ncRNAsTF->miRNA-|Target genes networksHow to use the TF-miRNA web interface